65 Healthy & Delicious Cookies for Clean Eating Lovers

Health-forward baking doesn’t have to stop at muffins and granola bars—cookies can join the party, too. By leaning on wholesome fats, natural sweeteners, fiber-rich grains, and creative add-ins, each recipe below delivers plenty of flavor without the processed extras. Keep the ingredients simple, measure carefully, and you’ll have a jar full of treats that satisfy snack cravings and keep nutrition goals on track.

1. Almond Butter Oatmeal Cookies

Rolled oats, creamy almond butter, and a touch of maple syrup form the base of this chewy classic. The cookies bake up with crisp edges and tender centers, no refined flour required. A pinch of flaky salt on top balances the sweetness beautifully.

2. Banana Almond Flour Snickerdoodles

Mashed ripe banana stands in for butter and eggs, while almond flour keeps things grain-free. A light coconut sugar and cinnamon coating delivers that classic snickerdoodle crust. They’re soft, aromatic, and perfect with a cup of herbal tea.

3. Maple Pecan Shorties

These tender shortbread rounds rely on oat flour, coconut oil, and pure maple syrup for a buttery taste minus the butter. Finely chopped pecans add crunch and healthy fats. Chill the dough before slicing so every cookie keeps a neat edge.

4. Coconut Oil Trail Mix Drops

Think of these as a portable granola bar in cookie form. Unsweetened coconut flakes, pumpkin seeds, and 70 % dark chocolate mingle in a lightly sweet oat batter bound with coconut oil. They’re sturdy enough for lunch boxes and hiking packs alike.

5. Honey-Sweetened Ginger Molasses Circles

Rich blackstrap molasses teams up with raw honey for deep flavor without refined sugar. Freshly grated ginger and warming spices keep each bite lively. Let the dough rest overnight for an even bolder spice profile.

6. Tahini Dark Chocolate Chip Cookies

Tahini lends subtle nuttiness and a dose of calcium, while coconut sugar provides mellow sweetness. Fold in dark chocolate chips for a bakery-style finish. The result is chewy, sophisticated, and utterly snack-worthy.

7. Quinoa Flake Raisin Rounds

Quinoa flakes mimic oatmeal’s texture but add extra protein. Plump raisins are soaked in orange juice before baking so they stay juicy. Each cookie offers a pleasant nutty flavor and soft bite.

8. Sweet Potato Breakfast Cookies

Mashed roasted sweet potato brings moisture, color, and beta-carotene. Whole rolled oats and almond meal give structure, turning these cookies into a legit grab-and-go breakfast. Coconut flakes on top toast up nicely in the oven.

9. Chia Seed Lemon Sugar-Free Cookies

Bright lemon zest and juice flavor a dough sweetened only with mashed dates. Ground chia seeds act as both binder and fiber boost. Expect a tender, muffin-like texture that pairs well with afternoon tea.

10. Pumpkin Spice Protein Bites

Unsweetened pumpkin purée, vanilla protein powder, and oat flour join forces for a soft, cakey treat. Maple syrup adds just enough sweetness, while pumpkin-pie spice delivers autumn vibes year-round. Store leftovers in the fridge for a cool post-workout snack.

11. Buckwheat Hazelnut Thumbprints

Buckwheat flour gives these thumbprints a delicate, earthy taste and gluten-free crumb. Toasted ground hazelnuts supply richness and healthy fats. A dab of no-sugar-added jam finishes each bite with fruity contrast.

12. Hemp Heart Almond Joys

Hemp hearts pack plant protein and omega-3s into every morsel. After baking, half the cookie gets dipped in melted dark chocolate for a riff on the candy-bar flavor. A quick chill sets the coating so they travel well.

13. Carrot Cake Soft Cookies

These cookies taste like a slice of carrot cake but bake in a fraction of the time. Almond flour, shredded carrot, raisins, and walnuts keep things moist and nutrient-dense. A light drizzle of coconut butter stands in for frosting.

14. Matcha White Chocolate Hemp Rounds

High-quality matcha powder provides antioxidant power and a gentle caffeine lift. Hemp seeds add crunch, while a few bits of naturally sweetened white chocolate balance the earthy tea notes. They’re striking on a cookie platter.

15. Peanut Butter Chickpea Cookies

Blended canned chickpeas create a surprisingly silky, high-fiber dough. Natural peanut butter and a touch of honey bind everything without wheat flour. Bake until the edges are set yet centers remain soft for the best texture.

16. Date-Sweetened Brownie Cookies

Puréeed Medjool dates replace refined sugar and keep these cookies moist. Almond flour and cocoa powder combine for a rich, brownie-like bite. A sprinkle of sea salt on top sharpens the chocolate flavor.

17. Cranberry Pistachio Biscotti Bites

Made with spelt flour and extra-virgin olive oil, these twice-baked cookies are lighter than traditional biscotti. Tart dried cranberries and toasted pistachios create color and crunch. Enjoy them with morning coffee—the texture softens pleasantly when dunked.

18. Spelt Flour Oat Raisin Cookies

Nutty spelt flour teams up with rolled oats for traditional flavor and extra minerals. Coconut oil keeps the crumb tender, while juicy raisins lend natural sweetness. A dash of cinnamon completes the nostalgic vibe.

19. Zucchini Chocolate Chip Rounds

Grated zucchini boosts moisture and sneaks veggies into dessert. Whole-wheat pastry flour offers a lighter texture than standard whole wheat. Mini dark-chocolate chips ensure you still get melty pockets in every bite.

20. Black Bean Espresso Cookies

Puréeing canned black beans creates a fudgy base rich in fiber and protein. Espresso powder deepens the cocoa flavor without adding many calories. Nobody will guess the secret ingredient unless you spill the beans.

21. Avocado Cocoa Nib Treats

Mashed ripe avocado replaces butter, delivering heart-healthy fats and a silky crumb. Unsweetened cocoa and nibs layer in intense chocolate notes. Lime zest brightens the flavor just enough to keep things interesting.

22. Raspberry Almond Linzer Minis

These grain-free linzers use almond and coconut flours for a melt-in-your-mouth texture. A dollop of no-sugar-added raspberry jam peeks through a tiny cutout. Dust lightly with homemade powdered coconut sugar for a festive touch.

23. Ginger Turmeric Immunity Cookies

Ground turmeric and fresh ginger team up for antioxidants and vibrant color. Honey provides gentle sweetness while coconut oil contributes a crisp edge. Black pepper is added in a pinch to enhance turmeric’s benefits without affecting flavor.

24. Goji Berry Coconut Macaroons

Unsweetened shredded coconut forms the base, bound with whipped aquafaba instead of egg whites for a vegan twist. Goji berries add a pop of color and antioxidants. Bake until just golden to keep centers moist.

25. Apple Cinnamon Breakfast Rounds

Finely diced apples, rolled oats, and almond butter create a hearty, naturally sweet cookie. Chia seeds swell during baking to hold everything together. They taste fantastic straight from the freezer on busy mornings.

26. Orange Walnut Biscotti Slims

Fresh orange zest perfumes a spelt-flour dough dotted with crunchy walnuts. Olive oil lends tenderness so the cookies don’t shatter when bitten. A second bake gives them the classic crisp texture perfect for dunking.

27. Almond Joy Protein Cookies

Vanilla protein powder, unsweetened coconut, and slivered almonds echo the candy bar without extra sugar. A quick dark-chocolate drizzle seals the deal. Store in an airtight tin so they stay chewy for days.

28. Blueberry Lemon Oat Cookies

Dried wild blueberries offer big flavor in a small package, while lemon zest brightens the mix. Rolled oats and whole-wheat pastry flour keep the texture hearty yet tender. Perfect for an afternoon energy boost.

29. Almond Flour Sugar-Free Sugar Cookies

Erythritol or monk-fruit sweetener stands in for traditional sugar, keeping carbs low. Almond flour lends buttery flavor and a soft crumb. Roll the dough between sheets of parchment to prevent sticking.

30. Sesame Date Bar Cookies

A base of tahini and oats mixes with blended Medjool dates for caramel-like sweetness. Toasted sesame seeds sprinkle on top for extra crunch. Chill thoroughly before slicing so the bars hold their shape.

31. Apricot Sunflower Seed Chews

Chopped dried apricots and sunflower seeds make a chewy, nut-free snack suitable for school lunches. Oat flour and mashed banana bring everything together. A touch of vanilla rounds out the flavor profile.

32. Pear Cardamom Oat Cookies

Grated ripe pear adds moisture and subtle sweetness to this spiced cookie. Ground cardamom pairs beautifully with oats for a Scandinavian vibe. Bake until edges turn golden and let cool completely for the flavors to bloom.

33. Pecan Pie No-Bake Cookies

Quick oats, chopped pecans, and almond butter form the base, while maple syrup binds everything with caramel notes. A brief chill in the fridge firms them up—no oven necessary. They taste like pecan pie in handheld form.

34. Chocolate Dipped Quinoa Crunch

Puffed quinoa gives a fun, crispy bite, similar to a candy bar center. A lightly sweet cocoa batter holds the grains together. After baking, dip each cookie in melted dark chocolate for an eye-catching finish.

35. Sourdough Discard Peanut Butter Cookies

Sourdough starter discard adds subtle tang and helps reduce waste. Natural peanut butter and coconut sugar keep the ingredient list short. Flatten with a fork in a classic criss-cross pattern before baking.

36. Olive Oil Rosemary Shortbread

Extra-virgin olive oil replaces butter, resulting in a delicate crumb and heart-healthy fats. Finely chopped fresh rosemary adds a savory hint that pairs nicely with a touch of honey. Slice into triangles while still warm for clean edges.

37. Mango Macadamia Coconut Cookies

Unsweetened dried mango pieces lend chewy bursts of fruit flavor. Macadamia nuts add buttery crunch, while coconut flakes tie everything together. Bake until just golden to keep the mango from toughening.

38. Triple Seed Energy Cookies

Chia, flax, and pumpkin seeds deliver omega-3s, fiber, and satisfying crunch. A mashed banana and date paste sweeten the dough naturally. These cookies are perfect for a quick mid-morning pick-me-up.

39. Strawberry Basil Thumbprints

Almond flour forms a tender base that contrasts nicely with bright strawberry preserves. Finely minced fresh basil adds a subtle herbal note. Press a thumbprint into each dough ball before baking to hold the jam.

40. Cinnamon Tahini Swirl Cookies

Tahini’s rich sesame flavor pairs surprisingly well with warming cinnamon. A quick swirl technique blends the two batters, creating eye-catching spirals. Coconut sugar keeps sweetness gentle and caramel-like.

41. Beetroot Chocolate Swirl Cookies

Roasted beet purée turns half the dough magenta, adding antioxidants and subtle earthiness. Swirled with cocoa batter, the cookies look as striking as they taste. Kids love the vibrant color, adults appreciate the hidden veggies.

42. Banana Coconut “Nice” Cookies

Two bananas, oats, and coconut flakes make a naturally sweet, oil-free cookie. They bake up soft, almost like mini banana breads. Enjoy warm for maximum tropical aroma.

43. Mocha Almond Biscotti

Instant espresso powder amplifies cocoa notes and delivers a coffee kick. Almond pieces add crunchy contrast. Slice on the diagonal after the first bake, then return to the oven until perfectly crisp.

44. Sweet Cornmeal Cookie Cakes

Stone-ground cornmeal gives these cookies a pleasant crunch and subtle sweetness reminiscent of cornbread. A drizzle of honey and splash of almond milk keep the batter tender. They pair wonderfully with fresh berries.

45. Yogurt Cranberry Breakfast Cookies

Greek yogurt bumps up the protein and keeps the crumb moist. Dried cranberries lend tart pops of flavor. A quick yogurt-honey drizzle sets once cooled for an effortless glaze.

46. Cashew Butter Maple Cookies

Creamy cashew butter gives these cookies a delicate, almost buttery note without dairy. Pure maple syrup sweetens gently and adds depth. Sprinkle with crushed roasted cashews for extra texture.

47. Pineapple Coconut Oatmeal Cookies

Crushed dried pineapple pieces provide chewy sweetness, while coconut flakes amplify island vibes. Old-fashioned oats supply fiber and lasting satiety. Bake just until edges brown so the centers stay soft.

48. Lemon Poppy Seed Almond Cookies

Almond flour and arrowroot starch create a light, shortbread-like crumb. Bright lemon zest and juice keep the flavor zippy, while poppy seeds add crunch. Store in the refrigerator to maintain their delicate texture.

49. Chocolate Chip Einkorn Cookies

Ancient einkorn wheat offers a nutty taste and more nutrients than standard white flour. Coconut sugar and dark-chocolate chunks keep things nostalgic yet mindful. Chill the dough to prevent spreading and achieve thick, bakery-style cookies.

50. Spirulina Coconut Bites

A touch of spirulina powder supplies vibrant color and a boost of minerals. Unsweetened coconut, almond flour, and honey round out the batter. The subtle sea-green hue always sparks conversation.

51. Honey Lavender Shortbread

Food-grade dried lavender buds lend floral notes, while honey adds gentle sweetness. Olive oil and almond flour create a tender crumb that melts on the tongue. Pair with chamomile tea for a calming snack.

52. Almond Butter Pumpkin Chip Cookies

Pumpkin purée and almond butter team up for a moist, nutrient-dense dough. Mini dark-chocolate chips add sweetness without overpowering the pumpkin spice. Serve slightly warm so the chips stay melty.

53. Spiced Fig & Walnut Rounds

Chopped dried figs bring natural chew and subtle caramel flavor. Toasted walnuts supply healthy fats and satisfying crunch. A whisper of cinnamon and nutmeg ties everything together.

54. Peanut Butter Banana Oat Cookies

Only five ingredients—banana, oats, peanut butter, vanilla, and dark-chocolate chips—create a soft, wholesome cookie. They mix up in one bowl and bake in under fifteen minutes. It’s a smart way to rescue overripe bananas.

55. Chocolate Hazelnut Protein Cookies

Hazelnut meal and chocolate protein powder combine for a Nutella-inspired flavor profile. A small splash of almond milk helps bind the dough without extra sugar. Flatten slightly for crisp edges and chewy centers.

56. Cardamom Pistachio Rose Cookies

Ground cardamom and chopped pistachios add Middle-Eastern flair. A sprinkle of edible dried rose petals after baking gives a delicate aroma and color. Almond flour keeps the texture light and tender.

57. Red Lentil Peanut Butter Cookies

Cooked, puréed red lentils sneak extra protein and fiber into each bite. Natural peanut butter masks any legume flavor, leaving a classic PB taste. They freeze beautifully, so whip up a double batch.

58. Cacao Nib Mint Cookies

Fresh mint leaves are blitzed with coconut sugar for authentic, bright flavor. Crunchy cacao nibs replace chocolate chips for lower sugar and added antioxidants. The finished cookies are crisp, refreshing, and not too sweet.

59. Coconut-Ginger Lime Cookies

Finely chopped crystallized ginger adds spicy chew, while lime zest keeps things zingy. Coconut oil and shredded coconut make each bite fragrant and tropical. They’re wonderful with iced green tea on a hot day.

60. Rye Flour Chocolate Chunk Cookies

Light rye flour offers a malty flavor that pairs perfectly with dark chocolate. Brown sugar and coconut oil create soft centers and crisp edges. Chill the dough for at least an hour to prevent overspreading.

61. Almond Butter Cinnamon Raisin Cookies

Almond butter, oat flour, and a generous sprinkle of cinnamon deliver big flavor with little fuss. Plump raisins add natural sweetness and chewy contrast. Enjoy them warm with a glass of oat milk.

62. Cranberry Orange Oat Cookies

Freshly grated orange zest perfumes an oat-heavy dough dotted with dried cranberries. Coconut oil keeps the crumb tender while enhancing citrus aromas. These cookies stay soft for days in an airtight container.

63. Vanilla Sesame Crunch Cookies

Both white and black sesame seeds coat these vanilla-scented cookies for extra crunch. Whole-wheat pastry flour balances nutrition and light texture. A quick toast of the seeds in a dry pan intensifies their flavor before baking.

64. Pumpkin Seed Chocolate Chip Cookies

Pepitas contribute zinc, magnesium, and satisfying crunch, while dark-chocolate chips sate sweet cravings. A blend of oat and almond flours keeps the cookies gluten-free. Cool completely before moving so the chips set firm.

65. Kale Oatmeal Breakfast Cookies

Finely minced baby kale blends seamlessly into a cinnamon-spiced oat batter, sneaking greens into breakfast. Applesauce adds moisture and mild sweetness without extra sugar. Bake until edges brown lightly and store extras in the freezer for quick defrosting.